Index C | D | E | F | G | I | M | P | R | S | T | W C calculate_cell_qc_metrics() (in module patpy.pp) calculate_compositional_metrics() (in module patpy.pp) calculate_distance_matrix() (patpy.tl.CellGroupComposition method) (patpy.tl.GroupedPseudobulk method) (patpy.tl.MrVI method) (patpy.tl.PILOT method) (patpy.tl.Pseudobulk method) (patpy.tl.RandomVector method) (patpy.tl.SampleRepresentationMethod method) (patpy.tl.SCPoli method) (patpy.tl.WassersteinTSNE method) calculate_n_cells_per_sample() (in module patpy.pp) CellGroupComposition (class in patpy.tl) convert_cell_types_to_phemd_format() (in module patpy.pp) D describe_metadata() (in module patpy.tl) DISTANCES_UNS_KEY (patpy.tl.CellGroupComposition attribute) (patpy.tl.GroupedPseudobulk attribute) (patpy.tl.MrVI attribute) (patpy.tl.PILOT attribute) (patpy.tl.Pseudobulk attribute) (patpy.tl.RandomVector attribute) (patpy.tl.SampleRepresentationMethod attribute) (patpy.tl.SCPoli attribute) (patpy.tl.WassersteinTSNE attribute) E early_stopping_kwargs (patpy.tl.SCPoli attribute) embed() (patpy.tl.CellGroupComposition method) (patpy.tl.GroupedPseudobulk method) (patpy.tl.MrVI method) (patpy.tl.PILOT method) (patpy.tl.Pseudobulk method) (patpy.tl.RandomVector method) (patpy.tl.SampleRepresentationMethod method) (patpy.tl.SCPoli method) (patpy.tl.WassersteinTSNE method) evaluate_prediction() (in module patpy.tl) evaluate_representation() (in module patpy.tl) (patpy.tl.CellGroupComposition method) (patpy.tl.GroupedPseudobulk method) (patpy.tl.MrVI method) (patpy.tl.PILOT method) (patpy.tl.Pseudobulk method) (patpy.tl.RandomVector method) (patpy.tl.SampleRepresentationMethod method) (patpy.tl.SCPoli method) (patpy.tl.WassersteinTSNE method) F fill_nan_distances() (in module patpy.pp) filter_small_cell_groups() (in module patpy.pp) filter_small_samples() (in module patpy.pp) fit_linear_probe() (patpy.tl.CellGroupComposition method) (patpy.tl.GroupedPseudobulk method) (patpy.tl.MrVI method) (patpy.tl.PILOT method) (patpy.tl.Pseudobulk method) (patpy.tl.RandomVector method) (patpy.tl.SampleRepresentationMethod method) (patpy.tl.SCPoli method) (patpy.tl.WassersteinTSNE method) G GroupedPseudobulk (class in patpy.tl) I is_count_data() (in module patpy.pp) M module patpy.pl patpy.pp patpy.tl MrVI (class in patpy.tl) P patpy.pl module patpy.pp module patpy.tl module PILOT (class in patpy.tl) plot_clustermap() (patpy.tl.CellGroupComposition method) (patpy.tl.GroupedPseudobulk method) (patpy.tl.MrVI method) (patpy.tl.PILOT method) (patpy.tl.Pseudobulk method) (patpy.tl.RandomVector method) (patpy.tl.SampleRepresentationMethod method) (patpy.tl.SCPoli method) (patpy.tl.WassersteinTSNE method) plot_embedding() (patpy.tl.CellGroupComposition method) (patpy.tl.GroupedPseudobulk method) (patpy.tl.MrVI method) (patpy.tl.PILOT method) (patpy.tl.Pseudobulk method) (patpy.tl.RandomVector method) (patpy.tl.SampleRepresentationMethod method) (patpy.tl.SCPoli method) (patpy.tl.WassersteinTSNE method) plot_metadata_distribution() (patpy.tl.CellGroupComposition method) (patpy.tl.GroupedPseudobulk method) (patpy.tl.MrVI method) (patpy.tl.PILOT method) (patpy.tl.Pseudobulk method) (patpy.tl.RandomVector method) (patpy.tl.SampleRepresentationMethod method) (patpy.tl.SCPoli method) (patpy.tl.WassersteinTSNE method) predict_knn() (in module patpy.tl) predict_metadata() (patpy.tl.CellGroupComposition method) (patpy.tl.GroupedPseudobulk method) (patpy.tl.MrVI method) (patpy.tl.PILOT method) (patpy.tl.Pseudobulk method) (patpy.tl.RandomVector method) (patpy.tl.SampleRepresentationMethod method) (patpy.tl.SCPoli method) (patpy.tl.WassersteinTSNE method) prepare_anndata() (patpy.tl.CellGroupComposition method) (patpy.tl.GroupedPseudobulk method) (patpy.tl.MrVI method) (patpy.tl.PILOT method) (patpy.tl.Pseudobulk method) (patpy.tl.RandomVector method) (patpy.tl.SampleRepresentationMethod method) (patpy.tl.SCPoli method) (patpy.tl.WassersteinTSNE method) prepare_data_for_phemd() (in module patpy.pp) Pseudobulk (class in patpy.tl) R RandomVector (class in patpy.tl) S SampleRepresentationMethod (class in patpy.tl) SCPoli (class in patpy.tl) subsample() (in module patpy.pp) T test_distances_significance() (in module patpy.tl) test_proportions() (in module patpy.tl) to_adata() (patpy.tl.CellGroupComposition method) (patpy.tl.GroupedPseudobulk method) (patpy.tl.MrVI method) (patpy.tl.PILOT method) (patpy.tl.Pseudobulk method) (patpy.tl.RandomVector method) (patpy.tl.SampleRepresentationMethod method) (patpy.tl.SCPoli method) (patpy.tl.WassersteinTSNE method) W WassersteinTSNE (class in patpy.tl)
